RNAi phenotypes

rnaiPhenotypes(
  version = getOption(x = "wormbase.version", default = NULL),
  BPPARAM = BiocParallel::bpparam()
)

Arguments

version

character(1) or NULL. WormBase version. If NULL (recommended), defaults to current production release version available on the WormBase website. Legacy versions can be specified as a character string (e.g. "WS262").

BPPARAM

bpparamClass. BiocParallel parameter to specify the desired processor configuration.
We recommend using one of the following:

Value

DataFrame.

Note

Updated 2019-08-28.

Examples

## WormBase FTP server must be accessible. tryCatch( expr = rnaiPhenotypes(), error = function(e) e )
#> Transmitting files from <ftp.wormbase.org>.
#> Files matching pattern: rnai_phenotypes_quick.WS277.wb
#> → Downloading rnai_phenotypes_quick.WS277.wb.gz.
#> → Importing rnai_phenotypes_quick.WS277.wb.gz at /private/var/folders/l1/8y8sjzmn15v49jgrqglghcfr0000gn/T/RtmpRU0dkX using vroom::`vroom()`.
#> DataFrame with 7914 rows and 2 columns #> geneID #> <character> #> 1 WBGene00000001 #> 2 WBGene00000002 #> 3 WBGene00000003 #> 4 WBGene00000004 #> 5 WBGene00000005 #> ... ... #> 7910 WBGene00305159 #> 7911 WBGene00305173 #> 7912 WBGene00305997 #> 7913 WBGene00305999 #> 7914 WBGene00306066 #> rnaiPhenotypes #> <list> #> 1 dauer induction variant,hermaphrodite sterile #> 2 chemical resistant,metal response variant #> 3 chemical resistant,metal response variant #> 4 chemical resistant,fat content increased,metal response variant #> 5 gonad development variant,male gonad development variant,male somatic gonad development variant,... #> ... ... #> 7910 fat content reduced #> 7911 embryonic lethal,spontaneous mutation rate increased,transgene expression increased,... #> 7912 chromosome segregation variant,embryonic lethal,meiosis variant,... #> 7913 fat content increased #> 7914 fat content reduced