Peptides

peptides(version = NULL, progress = FALSE)

Arguments

version

character(1) or NULL. WormBase version. If NULL (recommended), defaults to current production release version available on the WormBase website. Legacy versions can be specified as a character string (e.g. "WS262").

progress

logical(1). Show progress using pbapply package.

Value

tbl_df. Grouped by gene column.

Examples

x <- peptides()
#> Transmitting files from ftp.wormbase.org.
#> Files matching pattern: #> c_elegans.PRJNA13758.WS269.wormpep_package.tar.gz
#> Downloading c_elegans.PRJNA13758.WS269.wormpep_package.tar.gz.
#> Processing peptides...
glimpse(x)
#> Observations: 28,420 #> Variables: 8 #> Groups: geneID [20,191] #> $ geneID <chr> "WBGene00000001", "WBGene00000002", "WBGene00000003", "WBGen… #> $ sequence <chr> "Y110A7A.10", "F27C8.1", "F07C3.7", "F52H2.2a", "F52H2.2b", … #> $ wormpep <chr> "CE23248", "CE03266", "CE32853", "CE28440", "CE50751", "CE35… #> $ status <chr> "Predicted", "Predicted", "Predicted", "Predicted", "Predict… #> $ uniprot <chr> "G5EDP9", "Q19834", "Q19151", "O17395", "A0A0K3AVL7", "Q7YXH… #> $ insdc <chr> "CCD66201.1", "CAA92459.1", "CCD68934.1", "CCD71657.1", "CTQ… #> $ locus <chr> "aap-1", "aat-1", "aat-2", "aat-3", "aat-3", "aat-4", "aat-5… #> $ product <chr> NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, "Antibac…