Orthologs

orthologs(version = NULL, progress = FALSE)

Arguments

version

character(1) or NULL. WormBase version. If NULL (recommended), defaults to current production release version available on the WormBase website. Legacy versions can be specified as a character string (e.g. "WS262").

progress

logical(1). Show progress using pbapply package.

Value

tbl_df.

Examples

x <- orthologs()
#> Transmitting files from ftp.wormbase.org.
#> Files matching pattern: #> c_elegans.PRJNA13758.WS269.orthologs.txt.gz
#> Downloading c_elegans.PRJNA13758.WS269.orthologs.txt.gz.
#> Parsing lines in file...
#> Processing orthologs...
glimpse(x)
#> Observations: 20,205 #> Variables: 5 #> $ geneID <chr> "WBGene00000001", "WBGene00000002", "WBGene000… #> $ homoSapiens <list> [<"ENSG00000101082", "ENSG00000105647", "ENSG… #> $ musMusculus <list> [<"ENSMUSG00000027636", "ENSMUSG00000028698",… #> $ drosophilaMelanogaster <list> ["FBgn0020622", "FBgn0039844", <"FBgn0002778"… #> $ danioRerio <list> [<"ENSDARG00000018060", "ENSDARG00000034409",…