PCR oligo sequences

oligos(version = getOption(x = "wormbase.version", default = NULL))

Arguments

version

character(1) or NULL. WormBase version. If NULL (recommended), defaults to current production release version available on the WormBase website. Legacy versions can be specified as a character string (e.g. "WS262").

Value

DataFrame.

Note

Updated 2019-08-28.

Examples

## WormBase FTP server must be accessible. tryCatch( expr = oligos(), error = function(e) e )
#> Transmitting files from <ftp.wormbase.org>.
#> Files matching pattern: c_elegans.PRJNA13758.WS277.pcr_product2gene.txt.gz
#> → Downloading c_elegans.PRJNA13758.WS277.pcr_product2gene.txt.gz.
#> → Importing c_elegans.PRJNA13758.WS277.pcr_product2gene.txt.gz at /private/var/folders/l1/8y8sjzmn15v49jgrqglghcfr0000gn/T/RtmpRU0dkX using readr::`read_lines()`.
#> DataFrame with 18449 rows and 2 columns #> geneID oligo #> <character> <list> #> 1 WBGene00000001 cenix:90-h3,mv_Y110A7A.10,sjj_Y110A7A.k #> 2 WBGene00000002 cenix:38-c8,mv_F27C8.1,sjj_F27C8.1 #> 3 WBGene00000003 cenix:23-c7,mv_F07C3.7,sjj_F07C3.7 #> 4 WBGene00000004 cenix:65-h1,mv_F52H2.2,sjj_F52H2.2 #> 5 WBGene00000005 cenix:28-e8,mv_T13A10.10,sjj_T13A10.10,... #> ... ... ... #> 18445 WBGene00305970 sjj2_C09E7.2 #> 18446 WBGene00305999 cenix:304-c5,mv_T12A2.5,sjj_T12A2.5,... #> 18447 WBGene00306001 cenix:141-e6,sjj2_T16G12.8 #> 18448 WBGene00306002 sjj2_T24C4.9 #> 18449 WBGene00306003 cenix:338-b8,mv_W04B5.2,TH:338B8