External identifiers

externalIDs(genes, BPPARAM = BiocParallel::bpparam())

Arguments

genes

character. Gene identifiers (e.g. WBGene00004804).

BPPARAM

bpparamClass. BiocParallel parameter to specify the desired processor configuration.
We recommend using one of the following:

Value

DataFrame.

Note

Updated 2020-01-03.

Examples

## WormBase REST API must be accessible. genes <- c("WBGene00000912", "WBGene00004804") tryCatch( expr = externalIDs(genes), error = function(e) e )
#> DataFrame with 2 rows and 14 columns #> geneID aceView ncbi ndb omim #> <character> <list> <list> <list> <list> #> 1 WBGene00000912 1L351 172981 CELE_R13H8.1 222100,265380,268220,... #> 2 WBGene00004804 4G416 177343 CELE_T19E7.2 #> panther #> <list> #> 1 CAEEL|WormBase=WBGene00000912|UniProtKB=O16850 #> 2 #> refSeq signaLink swissProt #> <list> <list> <list> #> 1 NM_001026422.6,NM_001026425.6,NM_001026427.7,... WBGene00000912 O16850 #> 2 NP_001367379.1,NP_001368358.1,NP_741404.1,... WBGene00004804 P34707 #> treefam trEMBL uniProtGCRP wormFlux #> <list> <list> <list> <list> #> 1 TF315583 A0A0K3AR63,A0A0K3AR95,A0A0K3ATP5,... O16850 WBGene00000912 #> 2 TF317782 V6CLA3 P34707 WBGene00004804 #> wormQTL #> <list> #> 1 WBGene00000912 #> 2 WBGene00004804