Best BLASTP hits

blastp(version = getOption(x = "wormbase.version", default = NULL))

Arguments

version

character(1) or NULL. WormBase version. If NULL (recommended), defaults to current production release version available on the WormBase website. Legacy versions can be specified as a character string (e.g. "WS262").

Value

SplitDataFrameList. Split by wormpep column.

Note

Updated 2019-08-28.

Examples

## WormBase FTP server must be accessible. tryCatch( expr = blastp(), error = function(e) e )
#> Transmitting files from <ftp.wormbase.org>.
#> Files matching pattern: c_elegans.PRJNA13758.WS277.best_blastp_hits.txt.gz
#> → Downloading c_elegans.PRJNA13758.WS277.best_blastp_hits.txt.gz.
#> → Importing c_elegans.PRJNA13758.WS277.best_blastp_hits.txt.gz at /private/var/folders/l1/8y8sjzmn15v49jgrqglghcfr0000gn/T/RtmpRU0dkX using vroom::`vroom()`.
#> <simpleError: subscript contains out-of-bounds indices>