Best BLASTP hits

blastp(version = NULL)

Arguments

version

character(1) or NULL. WormBase version. If NULL (recommended), defaults to current production release version available on the WormBase website. Legacy versions can be specified as a character string (e.g. "WS262").

Value

tbl_df. Grouped by wormpep column.

Examples

x <- blastp()
#> Transmitting files from ftp.wormbase.org.
#> Files matching pattern: #> c_elegans.PRJNA13758.WS269.best_blastp_hits.txt.gz
#> Downloading c_elegans.PRJNA13758.WS269.best_blastp_hits.txt.gz.
#> Decompressing c_elegans.PRJNA13758.WS269.best_blastp_hits.txt.gz in tempdir().
#> Importing c_elegans.PRJNA13758.WS269.best_blastp_hits.txt using data.table::fread().
glimpse(x)
#> Observations: 14,660 #> Variables: 3 #> Groups: wormpep [14,557] #> $ wormpep <chr> "CE00004", "CE00015", "CE00034", "CE00063", "CE00072", "CE000… #> $ peptide <chr> "ENSP00000308897", "ENSP00000444192", "ENSP00000384886", "ENS… #> $ eValue <dbl> 1e-46, 0e+00, 4e-19, 8e-08, 1e-20, 9e-66, 7e-07, 2e-25, 9e-39…